Detailed information of SNP:
|
SNP ID:
sf1012748954(Gbrowse)
Chromosome: chr10 Position: 12748954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 95.75% | 4.25% |
| All Indica | 727 | 92.85% | 7.15% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 335 | 93.13% | 6.87% |
| Indica II | 203 | 92.61% | 7.39% |
| Indica Intermediate | 189 | 92.59% | 7.41% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012748954 | C->T | INTERGENIC | None |