Detailed information of SNP:
|
SNP ID:
sf1012756431(Gbrowse)
Chromosome: chr10 Position: 12756431 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 70.13% | 29.87% |
| All Indica | 766 | 60.18% | 39.82% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 360 | 70.00% | 30.00% |
| Indica II | 203 | 57.64% | 42.36% |
| Indica Intermediate | 203 | 45.32% | 54.68% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012756431 | T->C | INTERGENIC | None |