Detailed information of SNP:
|
SNP ID:
sf1012761105(Gbrowse)
Chromosome: chr10 Position: 12761105 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.00% | 3.00% |
| All Indica | 781 | 94.88% | 5.12% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012761105 | G->A | LOC_Os10g24920(LOC_Os10g24920.1) | Synonymous |