Detailed information of SNP:
|
SNP ID:
sf1012762189(Gbrowse)
Chromosome: chr10 Position: 12762189 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.53% | 37.47% |
| All Indica | 797 | 38.27% | 61.73% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 28.53% | 71.47% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012762189 | G->A | INTERGENIC | None |