Detailed information of SNP:
|
SNP ID:
sf1012762464(Gbrowse)
Chromosome: chr10 Position: 12762464 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 63.56% | 36.44% |
| All Indica | 778 | 39.46% | 60.54% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 29.09% | 70.91% |
| Indica II | 208 | 42.79% | 57.21% |
| Indica Intermediate | 209 | 54.07% | 45.93% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012762464 | T->C | INTERGENIC | None |