Detailed information of SNP:
|
SNP ID:
sf1012769887(Gbrowse)
Chromosome: chr10 Position: 12769887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 79.91% | 20.09% |
| All Indica | 746 | 65.15% | 34.85% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 347 | 69.16% | 30.84% |
| Indica II | 198 | 60.61% | 39.39% |
| Indica Intermediate | 201 | 62.69% | 37.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 10 | 90.00% | 10.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012769887 | C->T | LOC_Os10g24940(LOC_Os10g24940.1) | INTRON |