Detailed information of SNP:
|
SNP ID:
sf1012779621(Gbrowse)
Chromosome: chr10 Position: 12779621 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 66.34% | 33.66% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 490 | 5.92% | 94.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 63 | 12.70% | 87.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012779621 | T->A | LOC_Os10g24954(LOC_Os10g24954.1) | INTRON |