Detailed information of SNP:
|
SNP ID:
sf1012785299(Gbrowse)
Chromosome: chr10 Position: 12785299 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 76.43% | 23.57% |
| All Indica | 797 | 70.89% | 29.11% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012785299 | T->C | INTERGENIC | None |