Detailed information of SNP:
|
SNP ID:
sf1012819826(Gbrowse)
Chromosome: chr10 Position: 12819826 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.63% | 41.37% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012819826 | G->A | LOC_Os10g25040(LOC_Os10g25040.2) | UTR_3_PRIME |
| sf1012819826 | G->A | LOC_Os10g25040(LOC_Os10g25040.1) | UTR_3_PRIME |