Detailed information of SNP:
|
SNP ID:
sf1012820814(Gbrowse)
Chromosome: chr10 Position: 12820814 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 97.64% | 2.36% |
| All Indica | 796 | 97.24% | 2.76% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 23 | 69.57% | 30.43% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 3 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012820814 | A->C | LOC_Os10g25040(LOC_Os10g25040.2) | UTR_3_PRIME |
| sf1012820814 | A->C | LOC_Os10g25040(LOC_Os10g25040.1) | UTR_3_PRIME |