Detailed information of SNP:
|
SNP ID:
sf1012841057(Gbrowse)
Chromosome: chr10 Position: 12841057 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 94.91% | 5.09% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012841057 | C->T | LOC_Os10g25080(LOC_Os10g25080.1) | Non-Synonymous SNP |