Detailed information of SNP:
|
SNP ID:
sf1012873665(Gbrowse)
Chromosome: chr10 Position: 12873665 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1319 | 83.17% | 16.83% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 402 | 46.52% | 53.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 274 | 52.55% | 47.45% |
| Tropical Japonica | 74 | 22.97% | 77.03% |
| Japonica Intermediate | 54 | 48.15% | 51.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012873665 | C->T | LOC_Os10g25110(LOC_Os10g25110.1) | INTRON |