Detailed information of SNP:



SNP ID: sf1012878385(Gbrowse)

Chromosome: chr10

Position: 12878385
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1381 62.56% 37.44%
All Indica795 98.36% 1.64%
All Japonica497 6.84% 93.16%
Aus40 55.00% 45.00%
Indica I374 99.47% 0.53%
Indica II211 97.63% 2.37%
Indica Intermediate210 97.14% 2.86%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica94 11.70% 88.30%
Japonica Intermediate68 16.18% 83.82%
Group VI/Aromatic7 28.57% 71.43%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1012878385 C->T INTERGENIC None