Detailed information of SNP:
|
SNP ID:
sf1012878385(Gbrowse)
Chromosome: chr10 Position: 12878385 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 62.56% | 37.44% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 40 | 55.00% | 45.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 7 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012878385 | C->T | INTERGENIC | None |