Detailed information of SNP:
|
SNP ID:
sf1012988973(Gbrowse)
Chromosome: chr10 Position: 12988973 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.61% | 8.39% |
| All Indica | 788 | 85.79% | 14.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 372 | 90.32% | 9.68% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 206 | 72.33% | 27.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1012988973 | C->T | LOC_Os10g25280(LOC_Os10g25280.1) | Synonymous |