Detailed information of SNP:
|
SNP ID:
sf1013010848(Gbrowse)
Chromosome: chr10 Position: 13010848 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 88.28% | 11.72% |
| All Indica | 796 | 79.90% | 20.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 78.02% | 21.98% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 70.48% | 29.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013010848 | G->A | LOC_Os10g25300(LOC_Os10g25300.2) | INTRON |
| sf1013010848 | G->A | LOC_Os10g25300(LOC_Os10g25300.1) | INTRON |