Detailed information of SNP:
|
SNP ID:
sf1013013170(Gbrowse)
Chromosome: chr10 Position: 13013170 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 81.21% | 18.79% |
| All Indica | 796 | 78.89% | 21.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 77.81% | 22.19% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013013170 | C->G | INTERGENIC | None |