Detailed information of SNP:
|
SNP ID:
sf1013018582(Gbrowse)
Chromosome: chr10 Position: 13018582 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 64.00% | 36.00% |
| All Indica | 748 | 98.80% | 1.20% |
| All Japonica | 490 | 5.51% | 94.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 328 | 99.70% | 0.30% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 63 | 12.70% | 87.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013018582 | C->T | LOC_Os10g25310(LOC_Os10g25310.1) | INTRON |