Detailed information of SNP:
|
SNP ID:
sf1013032230(Gbrowse)
Chromosome: chr10 Position: 13032230 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.71% | 23.29% |
| All Indica | 798 | 66.42% | 33.58% |
| All Japonica | 496 | 89.11% | 10.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 39.20% | 60.80% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013032230 | G->A | INTERGENIC | None |