Detailed information of SNP:
|
SNP ID:
sf1013085023(Gbrowse)
Chromosome: chr10 Position: 13085023 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.43% | 23.57% |
| All Indica | 797 | 66.62% | 33.38% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 39.57% | 60.43% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013085023 | G->A | INTERGENIC | None |