Detailed information of SNP:



SNP ID: sf1013090643(Gbrowse)

Chromosome: chr10

Position: 13090643
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.31% 1.69%
All Indica799 100.00% 0.00%
All Japonica497 95.37% 4.63%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 86.17% 13.83%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1013090643 C->T LOC_Os10g25450(LOC_Os10g25450.1) Synonymous