Detailed information of SNP:
|
SNP ID:
sf1013192627(Gbrowse)
Chromosome: chr10 Position: 13192627 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013192627 | A->T | LOC_Os10g25590(LOC_Os10g25590.1) | UTR_3_PRIME |