Detailed information of SNP:
|
SNP ID:
sf1013204339(Gbrowse)
Chromosome: chr10 Position: 13204339 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 78.81% | 21.19% |
| All Indica | 796 | 72.61% | 27.39% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 67.83% | 32.17% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013204339 | G->A | INTERGENIC | None |