Detailed information of SNP:
|
SNP ID:
sf1013209620(Gbrowse)
Chromosome: chr10 Position: 13209620 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.65% | 18.35% |
| All Indica | 797 | 73.40% | 26.60% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 210 | 62.38% | 37.62% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013209620 | C->T | INTERGENIC | None |