Detailed information of SNP:
|
SNP ID:
sf1013246314(Gbrowse)
Chromosome: chr10 Position: 13246314 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1318 | 95.45% | 4.55% |
| All Indica | 791 | 96.21% | 3.79% |
| All Japonica | 428 | 97.43% | 2.57% |
| Aus | 47 | 70.21% | 29.79% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 290 | 98.97% | 1.03% |
| Tropical Japonica | 77 | 93.51% | 6.49% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013246314 | C->T | LOC_Os10g25710(LOC_Os10g25710.1) | Synonymous |