Detailed information of SNP:
|
SNP ID:
sf1013251427(Gbrowse)
Chromosome: chr10 Position: 13251427 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 64.68% | 35.32% |
| All Indica | 782 | 96.68% | 3.32% |
| All Japonica | 491 | 10.39% | 89.61% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 365 | 96.44% | 3.56% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 42.22% | 57.78% |
| Japonica Intermediate | 66 | 15.15% | 84.85% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013251427 | G->T | INTERGENIC | None |