Detailed information of SNP:
|
SNP ID:
sf1013251999(Gbrowse)
Chromosome: chr10 Position: 13251999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 95.98% | 4.02% |
| All Indica | 753 | 93.76% | 6.24% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 356 | 92.70% | 7.30% |
| Indica II | 198 | 93.94% | 6.06% |
| Indica Intermediate | 199 | 95.48% | 4.52% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013251999 | C->T | INTERGENIC | None |