Detailed information of SNP:
|
SNP ID:
sf1013254012(Gbrowse)
Chromosome: chr10 Position: 13254012 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 94.51% | 5.49% |
| All Indica | 771 | 91.70% | 8.30% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 356 | 88.48% | 11.52% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013254012 | C->T | INTERGENIC | None |