Detailed information of SNP:
|
SNP ID:
sf1013259756(Gbrowse)
Chromosome: chr10 Position: 13259756 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 65.35% | 34.65% |
| All Indica | 785 | 96.82% | 3.18% |
| All Japonica | 497 | 12.68% | 87.32% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 205 | 98.54% | 1.46% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013259756 | A->G | INTERGENIC | None |