Detailed information of SNP:
|
SNP ID:
sf1013269172(Gbrowse)
Chromosome: chr10 Position: 13269172 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1347 | 88.64% | 11.36% |
| All Indica | 738 | 89.02% | 10.98% |
| All Japonica | 487 | 86.04% | 13.96% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 342 | 87.13% | 12.87% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 185 | 84.86% | 15.14% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013269172 | G->A | INTERGENIC | None |