Detailed information of SNP:
|
SNP ID:
sf1013270505(Gbrowse)
Chromosome: chr10 Position: 13270505 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 66.10% | 33.90% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 496 | 16.73% | 83.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013270505 | C->G | LOC_Os10g25750(LOC_Os10g25750.1) | INTRON |