Detailed information of SNP:
|
SNP ID:
sf1013275186(Gbrowse)
Chromosome: chr10 Position: 13275186 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 71.53% | 28.47% |
| All Indica | 647 | 55.49% | 44.51% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 307 | 59.93% | 40.07% |
| Indica II | 159 | 39.62% | 60.38% |
| Indica Intermediate | 181 | 61.88% | 38.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013275186 | C->T | LOC_Os10g25760(LOC_Os10g25760.1) | Synonymous |