Detailed information of SNP:
|
SNP ID:
sf1013295625(Gbrowse)
Chromosome: chr10 Position: 13295625 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.04% | 44.96% |
| All Indica | 792 | 95.45% | 4.55% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013295625 | T->A | INTERGENIC | None |