Detailed information of SNP:
|
SNP ID:
sf1013310464(Gbrowse)
Chromosome: chr10 Position: 13310464 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.03% | 29.97% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 19.35% | 80.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013310464 | A->G | INTERGENIC | None |