Detailed information of SNP:
|
SNP ID:
sf1013311324(Gbrowse)
Chromosome: chr10 Position: 13311324 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 57.50% | 42.50% |
| All Indica | 761 | 80.16% | 19.84% |
| All Japonica | 494 | 17.81% | 82.19% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 362 | 75.14% | 24.86% |
| Indica II | 205 | 93.66% | 6.34% |
| Indica Intermediate | 194 | 75.26% | 24.74% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013311324 | G->A | INTERGENIC | None |