Detailed information of SNP:
|
SNP ID:
sf1013319435(Gbrowse)
Chromosome: chr10 Position: 13319435 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.29% | 33.71% |
| All Indica | 798 | 93.73% | 6.27% |
| All Japonica | 496 | 18.35% | 81.65% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013319435 | T->C | INTERGENIC | None |