Detailed information of SNP:
|
SNP ID:
sf1013343533(Gbrowse)
Chromosome: chr10 Position: 13343533 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 66.93% | 33.07% |
| All Indica | 795 | 94.84% | 5.16% |
| All Japonica | 492 | 18.70% | 81.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 330 | 1.82% | 98.18% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013343533 | A->G | LOC_Os10g25880(LOC_Os10g25880.1) | Synonymous |