Detailed information of SNP:
|
SNP ID:
sf1013349016(Gbrowse)
Chromosome: chr10 Position: 13349016 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 95.79% | 4.21% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 481 | 88.57% | 11.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 86 | 60.47% | 39.53% |
| Japonica Intermediate | 60 | 73.33% | 26.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013349016 | C->T | LOC_Os10g25890(LOC_Os10g25890.1) | INTRON |