Detailed information of SNP:
|
SNP ID:
sf1013373377(Gbrowse)
Chromosome: chr10 Position: 13373377 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.66% | 26.34% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 31.25% | 68.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 20.66% | 79.34% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013373377 | C->A | INTERGENIC | None |