Detailed information of SNP:
|
SNP ID:
sf1013404140(Gbrowse)
Chromosome: chr10 Position: 13404140 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.04% | 34.96% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013404140 | G->A | LOC_Os10g26030(LOC_Os10g26030.1) | Synonymous |