Detailed information of SNP:
|
SNP ID:
sf1013411322(Gbrowse)
Chromosome: chr10 Position: 13411322 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 90.88% | 9.12% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 488 | 86.89% | 13.11% |
| Aus | 54 | 16.67% | 83.33% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 88 | 55.68% | 44.32% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013411322 | G->A | INTERGENIC | None |