Detailed information of SNP:
|
SNP ID:
sf1013413453(Gbrowse)
Chromosome: chr10 Position: 13413453 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 57.21% | 42.79% |
| All Indica | 788 | 80.20% | 19.80% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 78.02% | 21.98% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013413453 | G->A | LOC_Os10g26040(LOC_Os10g26040.1) | Non-Synonymous SNP |