Detailed information of SNP:
|
SNP ID:
sf1013413582(Gbrowse)
Chromosome: chr10 Position: 13413582 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 95.61% | 4.39% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 17.74% | 82.26% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013413582 | C->T | LOC_Os10g26040(LOC_Os10g26040.1) | Non-Synonymous SNP |