Detailed information of SNP:
|
SNP ID:
sf1013418494(Gbrowse)
Chromosome: chr10 Position: 13418494 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 67.23% | 32.77% |
| All Indica | 794 | 96.35% | 3.65% |
| All Japonica | 496 | 17.94% | 82.06% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013418494 | C->T | LOC_Os10g26040(LOC_Os10g26040.1) | Non-Synonymous SNP |