Detailed information of SNP:
|
SNP ID:
sf1013429392(Gbrowse)
Chromosome: chr10 Position: 13429392 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 84.80% | 15.20% |
| All Indica | 736 | 72.83% | 27.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 338 | 55.03% | 44.97% |
| Indica II | 196 | 88.78% | 11.22% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013429392 | G->A | INTERGENIC | None |