Detailed information of SNP:
|
SNP ID:
sf1013442425(Gbrowse)
Chromosome: chr10 Position: 13442425 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 68.69% | 31.31% |
| All Indica | 782 | 99.10% | 0.90% |
| All Japonica | 482 | 15.98% | 84.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 99.46% | 0.54% |
| Indica II | 207 | 98.55% | 1.45% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 86 | 61.63% | 38.37% |
| Japonica Intermediate | 63 | 30.16% | 69.84% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013442425 | T->C | INTERGENIC | None |