Detailed information of SNP:
|
SNP ID:
sf1013453515(Gbrowse)
Chromosome: chr10 Position: 13453515 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 59.68% | 40.32% |
| All Indica | 797 | 30.99% | 69.01% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 33.78% | 66.22% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013453515 | A->T | LOC_Os10g26110(LOC_Os10g26110.1) | Non-Synonymous SNP |