Detailed information of SNP:
|
SNP ID:
sf1013454242(Gbrowse)
Chromosome: chr10 Position: 13454242 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 799 | 30.66% | 69.34% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013454242 | C->A | LOC_Os10g26110(LOC_Os10g26110.1) | Non-Synonymous SNP |