Detailed information of SNP:
|
SNP ID:
sf1013456210(Gbrowse)
Chromosome: chr10 Position: 13456210 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 86.18% | 13.82% |
| All Indica | 777 | 76.83% | 23.17% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 73.55% | 26.45% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 203 | 69.95% | 30.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013456210 | G->A | INTERGENIC | None |