Detailed information of SNP:
|
SNP ID:
sf1013462182(Gbrowse)
Chromosome: chr10 Position: 13462182 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.72% | 47.28% |
| All Indica | 798 | 69.55% | 30.45% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013462182 | G->A | INTERGENIC | None |