Detailed information of SNP:
|
SNP ID:
sf1013471588(Gbrowse)
Chromosome: chr10 Position: 13471588 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.92% | 37.08% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 15.56% | 84.44% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1013471588 | G->A | INTERGENIC | None |